Welcome to simS2E’s documentation!

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Contents:

• Getting started
  • System requirements
  • Installing Docker for example simS2E pipeline
  • Setting up the environment for simS2E
  • Setting up Sphinx for documenting simS2E simulation
• FEL source simulation
  • Introduction
  • Data access
  • Output data description
  • Diagnostic (diagnostic_felsrc.py)
• Propagation, including optics
  • Input data description
  • Diagnostic (diagnostic.py)
  • About WPG
• Photon Matter Interaction
  • Input/Output data description
  • Python script for HDF
• Coherent Diffraction
  • Input/Output data description
  • Diagnostic
  • Scaling behaviour of SingFEL
• Orientation Determination
  • Input/Output data description
  • Diagnostics of reconstructed 3D diffraction volume
• Phasing
  • Input/Output data description

Indices and tables

• Index
• Module Index
• Search Page